Publications

2013

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2012

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2011

Biodegradation mechanism of biphenyl by a strain of Pseudomonas stutzeri.
Tandlich, R., Vrana, B., Payne, S., Dercova, K., Balaz, S. J Environ Sci Health A Tox Hazard Subst Environ Eng. 2011;46(4):337-44. doi: 10.1080/10934529.2011.542383. [PubMed]

Rigorous Treatment of Multispecies Multimode Ligand-Receptor Interactions in 3D-QSAR: CoMFA Analysis of Thyroxine Analogs Binding to Transthyretin. J Chem Infr Model.
Natesan, S., Wang, T., Lukacova, V., Bartus, V., Khandelwal, A., Balaz, S. 2011 May 23;51(5):1132-50. doi: 10.1021/ci200055s. Epub 2011 Apr 8. [PubMed]

In vitro indeterminate teleost myogenesis appears to be dependent on Pax3.
Froehlich, J.M., Galt N.J., Charging M.J, Meyer B.M., Biga, P.R. In Vitro Cell Dev Biol Anim. 2013 May;49(5):371-85. doi: 10.1007/s11626-013-9616-2. Epub 2013 Apr 24. [PubMed]

Coumarin-suberoylanilide hydroxamic acid as a fluorescent probe for determining binding affinities and off-rates of histone deacetylase inhibitors.
Singh, R. K., Mandal, T., Balasubramanian, N., Cook, G. R., Srivastava, D. K. Anal. Biochem. 2011 Jan 15;408(2):309-15. Doi: 10.1016/j.ab.2010.08040. Epub 2010 Sep 22. [PubMed]

Histone Deacetylase Activators: N-acetylthioureas serve as highly potent and isozyme selective activators for human histone deacetylase-8 on a fluorescent substrate.
Singh, R.K., Mandal, T., Balasubranian, N., Viaene, T., Leedahl, T., Sule, N., Cook, G., Srivastava, D.K. Bioorg Med Chem Lett. 2011 Oct 1;21(19):5920-3. doi:10.1016/j.bmcl.2011.07.080. Epub 2011 Aug 4. [PubMed]

Vasoactive Intestinal Peptide Receptor 1 is Downregulated During Expansion of Antigen-Specific CD8 T Cells Following Primary and Secondary Listeria monocytogenes Infections.
Vomhof-Dekrey, E.E., Haring, J.S., Dorsam, G.P. J Neuroimmunol. 2011 May;234(1-2):40-8. doi: 10.1016/j.jneuroim.2011.02.002. Epub 2011 Mar 10. [PubMed]

Cyclic CO(2) emissions during the high temperature pulse of fluctuating thermal regime in the eye-pigmented pupae of Megachile rotundata.
Yocum, G.D., Greenlee, K.J., Rinehart, J.P., Bennett, M.M., and Kemp, W.P. Comp Biochem Physiol A Mol Integr Physiol. 2011 Dec;160(4):480-5. doi: 10.1016/j.cbpa.2011.08.004. Epub 2011 Aug 10. [PubMed]

The Frenkel Exciton Hamiltonian for Functionalized Ru (II)-bpy Complexes.
Albert V.V., Badaeva E., Kilina S., Sykora M., Tretiak S. J Lumines.  2011; 131:1739-46. Doi: 10.1016/j.lumin.2011.04.009. [PDF]

Formation of Assemblies Comprising Ru-polypyridine Complexes and CdSe Nanocrystals Studied by ATR-FTIR Spectroscopy and DFT Modeling.
Koposov A.Y., Cardolaccia T., Albert V., Badaeva E., Kilina S., Meyer T.J., Tretiak S., Sykora M. Langmuir. 2011 Jul 5;27(13):8377-83. doi: 10.1021/la200531s. Epub 2011 May 31. [PubMed]

Electronic Structure of Ligated CdSe Clusters: Dependence on DFT Methodology.
Albert, V., Ivanov S., Tretiak S., Kilina S.V. J Phys Chem C. 2011 Jul 7;115:15793-800. doi: 10.1021/jp202510z. [PDF]

Theoretical Study of Electron-Phonon Relaxation in Pbse and Cdse Quantum Dots: Evidence for Phonon Memory.
Kilina S.V., Kilin D.S., Prezhdo V.V., Prezhdo O.V. J Phys Chem C. 2011 Sep 22;115: 21641-51. doi: 10.1021/jp206594e. [PDF]

Ultrasensitive nucleic acid biosensor based on enzyme-gold nanoparticle dual label and lateral flow strip biosensor. Biosens Bioelectron.
He, Y., Zhang, S., Zhang, X., Baloda, M., Gurung, A.S., Xu, H., Zhang, X., Liu, G. 2011 Jan 15;26(5):2018-24. doi: 10.1016/j.bios.2010.08.079. Epub 2010 Sep 9. [PubMed]

Olfactory receptor based piezoelectric biosensors for detection of alcohols related to food safety applications.
Sankaran, S., Panigrahi, S., Mallik, S. Sensors and Actuators B: Chemical. 2011 Jul;155(1):8-18. doi: 10.1016/j.snb.2010.08.003. [Abstract]

Characterization of free radicals formed from COX-catalyzed DGLA peroxidation.
Xiao, Y., Gu, Y., Purwaha, P., Ni, K., Law, B., Mallik, S., Qian, S.Y. Free Radic Biol Med. 2011 May 1;50(9):1163-70. doi: 10.1016/j.freeradbiomed.2011.02.001. Epub 2011 Mar 4. [PubMed]

Fluorescent water soluble polymers for isozyme-selective interactions with matrix metalloproteinase-9.
Dutta, R., Scott, M.D., Haldar, M.K., Ganguly, B., Srivastava, D.K., Friesner, D.L., Mallik, S. Bioorg Med Chem Lett. 2011 Apr 1;21(7):2007-10. doi: 10.1016/j.bmcl.2011.02.020. Epub 2011 Feb 28. [PubMed]

Odorant binding protein based biomimetic sensors for detection of alcohols associated with Salmonella contamination in packaged beef.
Sankaran, S., Panigrahi, S., Mallik, S. Biosens Bioelectron. 2011 Mar 15;26(7):3103-9. doi: 10.1016/j.bois.2010.07.122. Epub 2010 Aug 27. [PubMed]

Fluorescent Liposomes for Differential Interactions with Glycosaminoglycans.
Nyren-Erickson, E.K., Haldar, M.K., Gu, Y., Qian, S.Y., Friesner, D.L., Mallik, S. Anal Chem. 2011 Aug 1;83(15):5989-95. doi: 10.1021/ac2009993. Epub 2011 Jun 30. [PubMed]

Society for the Advancement of Biology Education Research (SABER).
Offerdahl, E.G., Balser, T., Dirks, C., Miller, K., Momsen, J.L., Montplaisir, L., Osgood, M., Sirum, K., Wenderoth, M.P., White, B., Wood, W.B., Withers, M., Wright, R. CBE Life Sci Educ. 2011 Spring; 10(1):11–3. doi: 10.1187/cbe.10-11-0135. [PubMed]

Comparison of Views of the Nature of Science between Natural Science and Nonscience Majors.
Miller, M.C., Montplaisir, L.M., Offerdahl, E.G., Cheng, F.C., Ketterling, G.L. CBE Life Sci Educ. 2010 Spring; 9(1):45-54. doi: 10.1187/cbe.09-05-0029. [PubMed]

Characterization of free radicals formed from COX-catalyzed DGLA peroxidation.
Xiao, Y., Gu, Y., Purwaha, P., Ni, K., Law, B., Mallik, S., Qian S.Y. Free Radic Biol Med. 2011 May 1;50 (9):1163-70. doi: 10.1016/j.freeradbiomed.2011.02.001. Epub 2011 Mar 4. [PubMed]

LC/ESR/MS study of pH-dependent radical generation from 15-LOX-catalyzed DPA peroxidation.
Purwaha P., Gu Y., Kelavkar U., Kang J.X., Law B., Wu E., Qian S.Y. Free Radic Biol Med. 2011 Oct 1;51(7):1461-70. doi: 10.1016/j.freeradbiomed.2011.07.001. Epub 2011 Jul 19. [PubMed]

Antioxidant activity and phenolic compositions of lentil (Lens culinaris var. Morton) extract and its fractions.
Zou, Y., Chang, S.K., Gu, Y., Qian, S.Y. J. Agric Food Chem. 2011 Mar 23;59 (6): 2268-76. doi: 10.1021/jf104640k. Epub 2011 Feb 18. [PubMed]

Neuromelanin Activates Microglia and Induces Degeneration of Dopaminergic Neurons: Implications for Progression of Parkinson’s Disease.
Zhang, W., Phillips, K., Wielgus, A.R., Liu, J., Albertini, A., Zucca, F.A., Faust, R., Qian S.Y., Miller, D.S., Chignell, C.F., Wilson, B., Jackson-Lewis V., Przedborski, S., Joset, D., Loike, J., Hong, J.S., Sulzer, D., Zecca, L. Neurotox Res. 2011 Jan;19(1):63-72. doi: 10.1007/s12640-009-9140-z. Epub 2009 Dec 3. [PubMed]

Docosahexaenoic Acid (DHA) Sensitizes Brain Tumor Cells to Etoposide-Induced Apoptosis.
Wang, F., Bhat, K., Doucette, M., Zhou, S., Gu. Y., Law, B., Liu, X., Wong, E.T., Kang, J.X., Hsieh, T.C., Qian, S.Y., Wu, E. Curr Mol Med. 2011 Aug;11(6):503-11. [PubMed]

Fluorescent Liposomes for Differential Interactions with Glycosaminoglycans.
Nyren-Erickson, E.K., Haldar, M.K., Gu, Y., Qian, S.Y., Friesner, D.L., Mallik, S. Anal Chem. 2011 Aug 1;83(15):5989-95. doi: 10.1021/ac2009993. Epub 2011 Jun 30. [PubMed]

Design and synthesis of a near-infrared fluorescent nanofiber precursor for detecting cell-secreted urokinase activity.
Malik. R., Qian, S.Y., Law, B. Anal Biochem. 2011 May 1;412(1):26-33. doi: 10.1016/j.ab.2011.01.010. Epub 2011 Jan 13. [PubMed]

Plasmodium falciparum: Nitric oxide modulates heme speciation in isolated food vacuoles.
Ostera, G., Tokumasu, F., Teixeira, C., Collin, N., Sa, J., Hume, J., Kumar, S., Ribeiro, J., Lukat-Rodgers, G. S., Rodgers, K. R. Experimental Parasitology. 2011 January; 127(1):1-8. doi: 10.1016/j.exppara.2010.05.006. [PubMed]

Growth hormone-stimulated insulin-like growth factor-1 expression in rainbow trout (Oncorhynchus mykiss) hepatocytes is mediated by ERK, PI3K-AKT, and JAK-STAT.
Reindl, K., Kittilson, J., Bergan, H., Sheridan, M. A. Am. J. Physiol Regul Integr Comp Physiol. 2011 Jul; 301(1):R236-43. doi: 10.1152/ajpregu.00414.2010. Epub 2011 Apr 13. [PubMed]

Rainbow trout (Oncorhynchus mykiss) possess two hormone-sensitive lipase-encoding mRNAs that are differentially expressed and independently regulated by nutritional state.
Kittilson, J.D., Reindl, K., Sheridan, M. A. Comp Biochem Physiol A Mol Integr Physio. 2011 Jan; 158(1): 52-60. doi: 10.1016/j.cbpa.2010.09.010. Epub 2010 Sep 19. [PubMed]

A novel interplay between Rap1 and PKA regulates induction of angiogenesis in prostate cancer.
Menon, J., Doebele, R.C, Gomes, S, Bevilacqua, E., Reindl, K.M., Rosner, M.R. PLoS One. 2012;7(11):e49893. doi: 10.1371/journal.pone.0049893. Epub 2012 Nov 15. [PubMed]

Growth hormone-stimulated insulin-like growth factor-1 expression in rainbow trout (Oncorhynchus mykiss) hepatocytes is mediated by ERK, PI3K-AKT, and JAK-STAT.
Reindl K.M., Kittilson J.D., Bergan H.E., Sheridan M.A. Am J Physiol Regul Integr Comp Physiol. 2011 Jul;301(1):R236-43. doi: 10.1152/ajpregu.00414.2010. Epub 2011 Apr 13. [PubMed]

A comparison between intratracheal and inhalation delivery of Aspergillus fumigatus conidia in the development of fungal allergic asthma in C57BL/6.
Samarasinghe, A. E., Hoselton, S. A., Schuh, J. M. Fungal Biol. 2011 Jan;115(1):21-9. doi: 10.1016/j.funbio.2010.09.013. Epub 2010 Oct 8. [PubMed]

The absence of VPAC2 leads to aberrant antibody production in Aspergillus fumigatus sensitized and challenged mice.
Samarasinghe, A. E., Hoselton, S. A., Schuh, J. M. Peptides. 2011 Jan;32(1):131-7. doi: 10.1016/j.peptides.2010.09.022. Epub 2010 Oct 13. PMID: 20923692. [PubMed]

Stoichiometric Auxiliary Ligands for Metals and Main Group Elements: Ligands for Magnesium and Calcium.
Adachi S., Selvakumar, S., Sibi, M.P., Comprehensive Chirality2012, Vol3, pp 655-690 [Abstract]

Bis(trifluoromethylsulfonyl)imide. e-EROS Encyclopedia of Reagents for Organic Synthesis.
Selvakumar, S., Adachi, S. and Sibi, M. P. 2012. Magnesium 15 MAR 2012. doi: 10.1002/047084289X.m01373 [Wiley Online Library]

Chiral Bisoxazoline Ligands, in Privileged Chiral Ligands and Catalysts (ed Q.-L. Zhou).
Stanley, L. M. and Sibi, M. P. Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim, Germany. 7 APR 2011. doi: 10.1002/9783527635207.ch5 [Wiley Online Library]

Stereoselective Radical Reactions. Encyclopedia of Radicals in Chemistry, Biology and Materials.
Yang, Y.-H. and Sibi, M. P. 2012. 15 MAR 2012. doi: 10.1002/9781119953678.rad019. [Wiley Online Library]

Zinc Trifluoromethanesulfonate. e-EROS Encyclopedia of Reagents for Organic Synthesis.
Ham, P., Deng, J., Selvakumar, S. and Sibi, M. P. 2011. 15 MAR 2011. doi: 10.1002/047084289X.rz023.pub2. [Wiley Online Library]

Zinc Bis(trifluoromethylsulfonyl)imide. e-EROS Encyclopedia of Reagents for Organic Synthesis.
Yang, Y.-H. and Sibi, M. P. 2011. 15 SEP 2011. doi: 10.1002/047084289X.m01384. [Wiley Online Library]

MT2 receptors mediate the inhibitory effects of melatonin on nitric oxide-induced relaxation of porcine isolated coronary arteries.
Tunstall, R. R., Shukla, P., Grazul-Bilska A., Sun, C., O’Rourke, S. T. J Pharmacol Exp Ther. 2011 Jan;336(1):127-33. doi: 10.1124/jpet.110.174482. Epub 2010 Oct 19. [PubMed]

20-Hydroxyeicosatetraenoic acid induces apoptosis in neonatal rat cardiomyocytes through mitochondrial-dependent pathways.
Bao, Y., Wang, X., Li, W., Huo, D., Shen, X., Han, Y., Tan, J. Zeng, Q., Sun, C. J Cardiovasc Pharmacol. 2011 Mar;57(3):294-301. doi: 10.1097/FJC.0b013e3182073c78. [PubMed]

Pressor effect of apelin-13 in the rostral ventrolateral medulla: role of NAD(P)H oxidase-derived superoxide.
Yao, F., Modgil, A., Zhang, Q., Pingili, A., Singh, N., O’Rourke, S. T., Sun, C. J Pharmacol Exp Ther. 2011 Feb;336(2):372-80. doi: 10.1124/jpet.110.174102. Epub 2010 Nov 3. [PubMed]